species:   Venon
pid:       PID2102
parent:    vna-miR-2-5p
paralog:   
locus:     PDEZ01000011.1:123112-123169
matures:   ['ACGGGUCCGGAUAUGCAGCUUG', 'UCUCAUGUUCGGGCCCGUGG']
srr:       SRR11514754
genome:    /Users/jax/+Genomes/Fungal_genomes/Venon.GCA_002776445.1_ASM277644v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Jesenicnik2022-cp.SRR11514754.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Jesenicnik2022-cp.SRR11514754.cram PDEZ01000011.1:123112-123169

0 out of bounds
3 alignments
1 proper strand
1 stranded perfect matches

   **********************           ********************* 
GCCUUACGGGUCCGGAUAUGCAGCUUGCUCAGUAGCCUCUCAUGUUCGGGCCCGUGGC
(((..(((((((((((((((.((...(((....)))..))))))))))))))))))))
-----ACGGGUCCGGAUAUGCAGCUUG------------------------------- l=22 a=0 c
-------------------------------------UCUCAUGUUCGGGCCCGUGG- l=20 a=0 c*
-----ACGGGUCCGGAUAUGCAGCU--------------------------------- l=20 a=1 ma
--------------------------------------CUCAUGUUCGGGCCCGUGG- l=19 a=0 ma*

-----ACGGGUCCGGAUAUGCAGCU--------------------------------- l=20 a=1 (ma)

mb-01011
ax-1011011
ku-01
ss-100110011100
fn-001
